Publications

Emergent representations of graphical structure in mechanistic neural models of causal judgment.
M. A. Triplett & K. Kay. (2026). bioRxiv 2026.05.13.724819. [Link]

Computational optimization of two-photon holographic stimulation sites in vivo.
M. A. Triplett, E. Bäumler, A. Prodan, R. Stonis, D. S. Peterka, M. Häusser & L. Paninski. (2026). Journal of Neural Engineering 23 026015. [Link]

Rapid learning of neural circuitry from holographic ensemble stimulation enabled by model-based compressed sensing.
M. A. Triplett*, M. Gajowa*, B. Antin, M. Sadahiro, H. Adesnik & L. Paninski. (2025). Nature Neuroscience.  doi: 10.1038/s41593-025-02053-7. [Link]

Removing direct photocurrent artifacts in optogenetic connectivity mapping data via constrained matrix factorization.
B. Antin*, M. Sadahiro*, M. Gajowa, M. A. Triplett, H. Adesnik & L. Paninski. (2024). PLOS Computational Biology 20(5): e1012053. [Link]

Bayesian target optimisation for high-precision holographic optogenetics.
M. A. Triplett, M. Gajowa, H. Adesnik & L. Paninski. (2023). Advances in Neural Information Processing Systems (spotlight award). [Link]

Inference of multiplicative factors underlying neural variability in calcium imaging data.
M. A. Triplett & G. J. Goodhill (2022). Neural Computation 34(5), 1-27. [Link]

The reverse mathematics of theorems of Jordan and Lebesgue.
A. Nies, M. A. Triplett & K. Yokoyama. (2021). Journal of Symbolic Logic 86(4), 1657-1675. [Link]

Model-based decoupling of evoked and spontaneous neural activity in calcium imaging data.
M. A.Triplett, Z. Pujic, B. Sun, L. Avitan & G. J. Goodhill. (2020). PLOS Computational Biology 16(11): e1008330. [Link]

Probabilistic encoding models for multivariate neural data.
M. A. Triplett & G. J. Goodhill. (2019). Frontiers in Neural Circuits 13:1. [Link]

Emergence of spontaneous assembly activity in developing neural networks without afferent input.
M. A. Triplett, L. Avitan & G. J. Goodhill. (2018). PLOS Computational Biology  14(9): e1006421. [Link]

Prioritised ceteris paribus logic for counterfactual reasoning.
P. Girard & M. A. Triplett. (2018). Synthese 195:1681. [Link]

A three-layer network model of direction selective circuits in the optic tectum.
F. Abbas, M. A. Triplett, G. J. Goodhill& M. P. Meyer. (2017). Frontiers in Neural Circuits 11:88. [Link]

Genotype-covariate interaction effects and the heritability of adult body mass index.
M. R. Robinson, G. English, G. Moser, L. R. Lloyd-Jones, M. A. Triplett, Z. Zhu et al. (2017). Nature Genetics 49, 1174-1181 . [Link]

Ceteris paribus logic in counterfactual reasoning.
P. Girard & M. A. Triplett. (2016). Proceedings of the Fifteenth Conference on Theoretical Aspects of Rationality and Knowledge (TARK). Electronic Proceedings in Theoretical Computer Science 215. [Link]